Motel 6 and La Quinta are the 2 most pet-friendly chains.
Amarillo (3), Holbrook, and Barstow all have a Motel 6. Amarillo has 2 La Quintas. Other chains have varying pet policies, you would need to research each property.
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Over the years, my husband and I have tried many things, including "let's drive straight through." BAD mistake; we were lucky it wasn't fatal. We were just exhausted when we got to where we were going. Stay in a hotel 3 nights, your body will love you.
Donna